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Bioinformatics data
I recently had a chance to learn a little about Bioinformatics, and ended up browsing the NIH’s database of genomes here. Inside the genome data for any particular strain of a species, you’ll find various files with file extensions like “ffa”, “fna”, “ffn” and “frn”. These are FASTA files. If you’d like an example, here’s…
jvmBasic Railroad Diagram
AntlrI4DE is an Eclipse plugin for editing Antlr4 grammars. One of the features I used to really like in the original Antlr IDE was the ability to generate railroad diagrams. It turns out that Antlr4IDE has this feature, so I decided to give it a try. My jvmBasic grammar is here, and you can…
OpenAPI
I recently had reason to get to know OpenAPI at work, so I decided to become familiar with it. I have a HomeSeer home controller at home, which exposes a JSON API, so I decided to write a Java OpenAPI server to expose the JSON API over OpenAPI. The net result is hsOpenAPI. It exposes…
Pragmatch version 1.38 Released
Pragmatach version 1.38 has been released Here are the notable changes: Numerous bugs that were identified by Findbugs have been resolved. Upgraded from Antlr3 to Antlr4 Upgraded to scannotation 1.03 Added url_for API to make generation of urls in templates simpler
phpGrammar
I’ve recently becoming interested in porting legacy PHP sites to JSPs. It seemed to me that one of the hardest parts of this problem was parsing the PHP code. Once a parse tree was created, the next step would be to emit equivalent JSP code. I went looking for an ANTL4 grammar for PHP,…
Ebean-DAO
When building database ORM code, I prefer to use ebean, and I prefer to use DAO‘s. Since DAO’s are simple to make generic, I have a Generic DAO I use for all projects. I’ve finally decided to open-source my DAO code, and you can find it here https://github.com/teverett/ebean-dao.